PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.102710.1
Common NameCsa_6G491690, LOC101212558
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 286aa    MW: 30804.7 Da    PI: 9.7079
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.102710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-191257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + 
   Cucsa.102710.1 12 KGPWSPEEDDALQRLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                     79******************************.***********985 PP

2Myb_DNA-binding53.36.6e-1766108347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++eEde +++a++ +G++ W+tIar +  gRt++ +k++w++ 
   Cucsa.102710.1  66 PFSPEEDETIIRAHANFGNR-WATIARLLT-GRTDNAVKNHWNST 108
                      89******************.********9.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.302762IPR017930Myb domain
SuperFamilySSF466894.49E-329105IPR009057Homeodomain-like
SMARTSM007172.0E-171160IPR001005SANT/Myb domain
PfamPF002493.0E-191257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-261365IPR009057Homeodomain-like
CDDcd001676.96E-171456No hitNo description
SMARTSM007172.1E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129420.41464113IPR017930Myb domain
CDDcd001678.16E-1266109No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2366112IPR009057Homeodomain-like
PfamPF002492.4E-1466108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MALTRKDMDR IKGPWSPEED DALQRLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
QVEHRPFSPE EDETIIRAHA NFGNRWATIA RLLTGRTDNA VKNHWNSTLK RKCSLMMNEG  120
YEVDPNVQPM KKSVSAGAAV NASNGLYMSP GSPSGSDISD SSVPVVSPTV YRPVARTGGV  180
IPPGESAPSS ATDPPTSLSL SLPGVDSSRH SGSGMTTTEQ VRTAQPSGGA GEKINGFGVF  240
SADLMAVMQE MIKSEVKSYM EGLSEQRGRR CFQEAKAGGI KNVSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1msf_C2e-40111133105C-Myb DNA-Binding Domain
1mse_C2e-40111133105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141899.10.0PREDICTED: transcription factor MYB44-like
SwissprotQ9FDW13e-95MYB44_ARATH; Transcription factor MYB44
TrEMBLA0A0A0KJL50.0A0A0A0KJL5_CUCSA; Sucrose responsive element binding protein
STRINGPOPTR_0007s10490.11e-121(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-72myb domain protein 70
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]